Résumé

Teaching

CV

Beekeeper

Siller Pollinator Company

2022 – now

Baker

Bodo's Bagels

2018 – 2022

Worked as part of a team to bake bagels, take orders, prepare food, and maintain workspace.
  • Baked up to hundreds of bagels per hour, and scaled numbers based on anticipated store business
  • Cleaned workstation daily, and maintained oven, kettle, and seeds — including developing protocols to rotate and clean seed containers to avoid contamination and control quality
  • Prepared ingredients in back-of-house — e.g., sliced meats, prepared salads, and made dough
  • Took customer orders and answered questions while maintaining a consistently positive attitude
  • Made sandwiches to order as part of a flexible assembly line

PhD student

University of Virginia Department of Biology, advised by Edmund Brodie III

2010 – 2017 (left without degree)

Using a combination of field and greenhouse studies, I investigated how sexual dimorphism evolves in species with complex mating systems. In particular, the role of selection and the allele mixing from mating in the gynodioecious plant Silene vulgaris.
  • Designed and implemented projects at multiple scales, from small classroom experiments to multiyear breeding designs
  • Analyzed data using regression-based statistics, including combinations of continuous and categorical variables, interaction terms, mixtures of fixed and random effects, and nonnormal error distributions (e.g., logistic regression for survivorship data)
  • Planted and cared for several thousand plants, and intermated them according to a partial diallel mating design
  • Mentored undergraduate students, including helping them design experiments, teaching them to read scientific literature, meeting regularly, and helping them interpret and communicate their results
  • Taught numerous classes as a graduate teaching assistant. Led class-wide and small-group discussions, lectured in classroom settings, graded and edited short- and long-form writing assignments. See my teaching resumé for more details.
  • Wrote ImageJ and MATLAB scripts to collect morphological data from flower photos, and individual-based simulations in C++ to model population genetics. See biology for details and code.

Junior developer

Aquafadas SAS

2010

Created backend software tools to help in preparing comic books and magazines for display in smartphone applications.
  • Used edge detection and morphological operations to detect speech bubbles for user-aided outlining
  • Wrote Octave and C++ programs to automatically detect text size using Gabor filters
  • Created a system to match images using bag-of-words techniques on SURF keypoints
  • Wrote PHP scripts to align and merge images that had been manipulated and split over multiple pages

Research associate

Drexel University Mechanical Engineering and Mechanics Department, M. Ani Hsieh's lab

2009

Used MATLAB and C++ to develop software for automatic detection and identification of barcoded beetles in photographs.
  • Wrote code to take photos at regular intervals using the Canon SDK
  • Found moving objects using background subtraction and image averaging
  • Set up a simple Linux server for the lab to share files and run simulations

Swarthmore College

2005 – 2009

Computer Science and Biology majors

Programming languages

  • Fluent: Python, R
  • Proficient: C++, C, SQL, Matlab, Bash
  • Familiar: HTML/CSS, PHP, JavaScript

Programs:

Vim, ImageJ, git, bzr, LaTeX, Microsoft Word and Excel

Computer science and programming:

  • Flow control and run-time analysis
  • Object-oriented programming
  • Information retrieval and natural language processing
  • Image processing and analysis

Evolutionary biology:

  • Analysis of the strength and direction of natural selection
  • Crossing design and heritability estimation

Experimental design and regression-based statistics:

  • Observational and experimental studies
  • Factorial, nested, and partial constrast designs
  • Inference and prediction for linear models
  • Continuous, categorical, and interaction variables
  • Fixed and random effects
  • Generalized linear models

Beekeeping

Assess condition of hives, measure parasite levels and treat disease, find and track queens, maintain records

Home brewing

I've brewed a variety of styles of beer using malt extract

Gardening

Still a neophyte, but learning the basics of soil preparation and plant care

Charlottesville-Albemarle SPCA

I have fostered for several years, mainly puppies and dogs

IRC New Roots

I help maintain infrastructure and perform gardening tasks as requested by refugee gardeners

Teaching

Genetics and molecular biology

Teaching assistant

2017

Met weekly with three sets of thirty students, divided into groups of 3–4. Groups worked together to solve genetics problems, while I offered help, mediated disputes, and graded their responses. Topics included the molecular mechanisms of replication and transcription, as well as probabilistic models of trait inheritance.

Microbioly laboratory

Teaching assistant

2016

Helped students set up and maintain cultures of various bacteria, and interpret their growth results.

Introduction to organismal and evolutionary biology laboratory

Teaching assistant

2012, 2013, and 2015

Used small experiments and observations of organisms to teach students about major branches in the tree of life and how natural selection can shape populations.

Cell biology and genetics laboratory

Teaching assistant

2013 and 2014

Taught students how to set up and interpret simple experiments in a lab setting.

Biology of infectious disease

Teaching assistant

2014

Met weekly with three sets of 24 students to discuss disease ecology. I was responsible for guiding the discussion and organizing side projects. Topics included the natural history of several types of disease, as well as mathematical models of disease transmission.

Functional morphology of vertebrates

Teaching assistant

2011 and 2012

Helped students dissect vertebrate specimens and identify organs each week, wrote and graded quizzes each week testing their ability to synthesize what they saw and place it in a broader context.

  • Classroom management, exam and quiz writing, Socratic method
  • Scientific method, experimental design, evolutionary biology, genetics, ecology
  • Probability, regression-based statistics, calculus, linear algebra
  • Programming, computer science

Academic

Sanderson BJ, Augat ME, Taylor DR, and Brodie III ED (2016). Scale dependence of sex ratio in wild plant populations: implications for social selection. Ecology and evolution, 6(5):1411-1419.

Formica VA, Wood CW, Larsen W, Butterfield RE, Augat ME, Hougen H, and Brodie III ED (2012). Fitness consequences of social network position in a wild population of forked fungus beetles (Bolitotherus cornutus). Journal of Evolutionary Biology, 25(1):130-137.

Formica VA, McGlothlin JW, Wood CW, Augat ME, Butterfield RE, Barnard ME, and Brodie III ED (2011). Phenotypic assortment mediates the effect of social selection in a wild beetle population. Evolution, 65(10):2771-2781.

Formica VA, Augat ME, Barnard ME, Butterfield RE, Wood CW, and Brodie III ED (2010). Using home range estimates to construct social networks for species with indirect behavioral interactions. Behavioral Ecology and Sociobiology, 64(7):1199.

Tomasik B, Kim JH, Ladlow M, Augat ME, Tingle D, Wicentowski R, and Turnbull D (2009). Using regression to combine data sources for semantic music discovery. In International Symposium on Music Information Retrieval.

*Escoto KM and Augat ME (2014). The scale of social interaction in Silene vulgaris. Swarthmore Sigma Xi fall poster session.

Augat ME and Brodie III ED (2013). The response to selection in complex mating systems. Evolution 2013 conference.

Augat ME, McGlothlin JW, and Brodie III ED (2011). The Evolution of between-sex genetic correlations under directional selection. Evolution 2011 poster session.


* Undergraduate collaborator